Data input

Column

BayesTraits Header

Column

Restrictions

Reconstructions / Fossilisations

[1] "No tags or reconstructions set"

Priors

Tree

MCMC traces

Column

ML Chain

This plot shows 10,000 random iterations of the Maximum Likelihood chains

Column

ML Chain Density

ML Chain violins

MCMC Diagnostics

Column

Effective Sampling Sizes

Column

Autocorrelation

Rate Estimates

Row

Root State

Root state probabilities for each run

Root state probabilities for each run

Transition Rates Network

Mean transition rates

Mean transition rates

Row

Transition Rates Densities

Density distributions of rate transition estimates. Line show mean rates.

Density distributions of rate transition estimates. Line show mean rates.

Node Reconstructions

[1] "No nodes were set for ancestral state reconstrucitions"

Column

Node Reconstruction / Fossilisation

[1] "No nodes were set for ancestral state reconstrucitions"

Column

Phylogeny

Acceptance Rates

Mean Acceptance Parameters

Acceptance Parameters Traces

RevJ Model Reduction

Row

Reverse Jump Model Sampling

Reverse Jump Model Ranking - Table

Reverse Jump Model Ranking - Barchart

Row

% Non-zero transitions

edge numbers show % of the posterior the transition was non-zero

edge numbers show % of the posterior the transition was non-zero

Three most frequently sampled model

edge numbers show transition rates

edge numbers show transition rates

Model Comparison - LogBF

Column

Stepping Stone Sampler

[1] "No stepping stones sampler set"

Log Marginal Likelihood

[1] "No stepping stones sampler set"

Log Bayes Factor

[1] "No stepping stones sampler set"

Column

Stone Power

[1] "No stepping stones sampler set"

Stone Marginal Likelihood

[1] "No stepping stones sampler set"

Running Marginal Likelihood

[1] "No stepping stones sampler set"